Author

Bonnie Choy

Northwestern UniversityORCID 0000-0002-3670-3715Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Organism:human· 2 Approach:machine learning (classical)· 2 Assay:scRNA-seq· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Joshua J. MeeksiD· 2 shared Erik Z. LiiD· 1 shared Hongshen NiuiD· 1 shared Joseph R. PodojiliD· 1 shared Khyati A. MeghaniiD· 1 shared Mairah T. Khan· 1 shared Noah Frydenlund· 1 shared Ryan J. BrowniD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersCancer Biology

Joshua J. MeeksORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Cancer BiologyEuropean UrologyPeer-reviewedOct 7, 2025

Genomic and transcriptomic profiling of high-risk bladder cancer reveals diverse molecular and microenvironment ecosystems

Khyati A. Meghani, Yanni Yu, Noah Frydenlund…·Joshua J. Meeks

This study identifies four bladder cancer subtypes using transcriptomic and genomic data, finds one subtype responsive to BCG therapy, and develops a predictive model for recurrence risk.

5 citations

humanbulk RNA-seq

ImmunologybioRxivPreprintSep 18, 2025

Divergent Macrophage-Regulated T cell States Determine Response to Bacillus Calmette-Guerin (BCG) in High-Risk Bladder Cancer

Ryan J. Brown, Mairah T. Khan, Hongshen Niu…·Joshua J. Meeks

The paper identifies divergent macrophage-regulated T cell states in BCG responders and non-responders in high-risk bladder cancer, linking them to immune response outcomes.

DOI 10.1101/2025.09.18.677132

humanscRNA-seq