Author

Yanni Yu

Northwestern UniversityORCID 0009-0002-4254-7680Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Assay:scRNA-seq· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Joshua J. MeeksiD· 2 shared Bonnie ChoyiD· 1 shared Damiano FantiniiD· 1 shared Erik Z. LiiD· 1 shared Khyati A. MeghaniiD· 1 shared Noah Frydenlund· 1 shared Salvatore CondelloiD· 1 shared Sarki Abba AbdulkadiriD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 21 mutual co-author links

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2 shared papersCancer Biology

Joshua J. MeeksORCID

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2 papers

Recent·Most cited

Genomic and transcriptomic profiling of high-risk bladder cancer reveals diverse molecular and microenvironment ecosystems

Khyati A. Meghani, Yanni Yu, Noah Frydenlund, Erik Z. Li, Bonnie Choy, Sarki Abba Abdulkadir, Joshua J. Meeks

This study identifies four bladder cancer subtypes using transcriptomic and genomic data, finds one subtype responsive to BCG therapy, and develops a predictive model for recurrence risk.

European Urology · Oct 7, 2025Peer-reviewedCancer Biology

MutSignatures: An R Package for Extraction and Analysis of Cancer Mutational Signatures

Damiano Fantini, Vania Vidimar, Yanni Yu, Salvatore Condello, Joshua J. Meeks

The paper introduces mutSignatures, an R package for analyzing cancer mutational signatures, showing it can identify known signatures and reveal new patterns linked to clinical and molecular features.

Scientific Reports · Oct 26, 2020Peer-reviewedBioinformatics