Author

Charley G. P. McCarthy

Dalhousie UniversityORCID 0000-0002-3880-9978Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:phylogenetics / evolution· 2 Approach:statistical model· 2 Approach:deep learning· 1 Organism:multiple species· 1 Assay:protein sequence· 1 Assay:proteomics· 1

Frequent Co-Authors

Andrew J. RogeriD· 2 shared Edward SuskoiD· 2 shared Alastair G. B. SimpsoniD· 1 shared Bùi Quang MinhiD· 1 shared Hector BañosiD· 1 shared Kelsey WilliamsoniD· 1 shared Laura EmeiD· 1 shared Russell J. S. OrriD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersEvolutionary Biology

Andrew J. RogerORCID

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2 papers

Recent·Most cited

Modeling site-and-branch-heterogeneity with GFmix

Charley G. P. McCarthy, Edward Susko, Ryo Harada, Andrew J. Roger

The paper improves the GFmix model to better handle site-and-branch compositional heterogeneity in phylogenetic inference, showing improved accuracy in tree estimation.

Systematic Biology · May 27, 2026Peer-reviewedEvolutionary Biology

A robustly rooted tree of eukaryotes reveals their excavate ancestry.

Kelsey Williamson, Laura Eme, Hector Baños, Charley G. P. McCarthy, Edward Susko, Ryoma Kamikawa, Russell J. S. Orr, Sergio A. Muñoz-Gómez, Bùi Quang Minh, Alastair G. B. Simpson, Andrew J. Roger

This study estimates the root of the eukaryote Tree of Life using mitochondrial proteins, finding it between Opimoda+ and Diphoda+ supergroups.

Nature · Mar 12, 2025Peer-reviewedEvolutionary Biology