Author

Mark Jones

Delft University of TechnologyORCID 0000-0002-4091-7089Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Evolutionary Biology· 2

Signature Assays, Organisms & Methods

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Research Focus:phylogenetics / evolution· 2 Approach:statistical model· 2 Approach:deep learning· 1 Assay:DNA methylation· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Leo J. J. van IerseliD· 2 shared Niels HoltgrefeiD· 2 shared Aviva K. EnglanderiD· 1 shared Elizabeth GrossiD· 1 shared Katharina T. HuberiD· 1 shared Martin FrohniD· 1 shared Samuel MartiniD· 1 shared Seth SullivantiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 24 mutual co-author links

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2 shared papersEvolutionary Biology

Leo J. J. van IerselORCID

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2 papers

Recent·Most cited

Identifiability of Phylogenetic Level-2 Networks under the Jukes-Cantor Model

Aviva K. Englander, Martin Frohn, Elizabeth Gross, Niels Holtgrefe, Leo J. J. van Iersel, Mark Jones, Seth Sullivant

This paper shows that certain complex phylogenetic networks are identifiable from DNA sequences under the Jukes-Cantor model, with implications for distinguishing reticulated components.

bioRxiv · Apr 18, 2025 · PreprintEvolutionary Biology

Squirrel: Reconstructing semi-directed phylogenetic level-1 networks from four-leaved networks or sequence alignments

Niels Holtgrefe, Katharina T. Huber, Leo J. J. van Iersel, Mark Jones, Samuel Martin, Vincent Moulton

This paper introduces an algorithm to reconstruct semi-directed phylogenetic level-1 networks from four-leaved networks or sequence alignments, demonstrating its performance on simulated and real data.

Molecular Biology and Evolution · Mar 27, 2025Peer-reviewedEvolutionary Biology