Author

Mahmoud Ahmed

Gyeongsang National UniversityORCID 0000-0002-4377-6541Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 3 Approach:statistical model· 3 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1

Frequent Co-Authors

Deok Ryong KimiD· 3 shared Trang Huyen LaiiD· 2 shared Jin Seok HwangiD· 1 shared Omar ElashkariD· 1 shared Sahib ZadaiD· 1 shared Trang Minh PhamiD· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBioinformatics

Deok Ryong KimORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Re-implementation of an algorithm to integrate transcriptome and ChIP-seq data

Mahmoud Ahmed, Deok Ryong Kim

The paper reimplements the BETA algorithm in R to integrate transcriptome and ChIP-seq data, replicating original results and demonstrating robustness to input variations and cutoff choices.

bioRxiv · Nov 23, 2022 · PreprintBioinformatics

Hierarchical Regulation of Autophagy During Adipocyte Differentiation

Mahmoud Ahmed, Trang Huyen Lai, Trang Minh Pham, Sahib Zada, Omar Elashkar, Jin Seok Hwang, Deok Ryong Kim

This study identifies a hierarchical regulation of autophagy during adipocyte differentiation by adipogenic transcription factors and co-factors.

PLoS ONE · Jan 26, 2022Peer-reviewedSystems Biology

A small fraction of progenitors differentiate into mature adipocytes due to constraints on the cell structure change

Mahmoud Ahmed, Trang Huyen Lai, Deok Ryong Kim

The paper identifies a small fraction of pre-adipocytes that differentiate into mature adipocytes, showing structural constraints limit this process.

bioRxiv · Mar 10, 2021 · PreprintBioinformatics