Author

Laia Bassaganyas

Centre National de la Recherche ScientifiqueORCID 0000-0002-4575-0214Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 4 Approach:statistical model· 3 Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:cell-cell communication· 1 Research Focus:deconvolution· 1

Frequent Co-Authors

Andrei TurtoïiD· 1 shared Andrew I. SuiD· 1 shared Antoni CastellsiD· 1 shared Daniel R. Salomon· 1 shared Didier Pourquier· 1 shared Emmanuel CornillotiD· 1 shared Eva Hernández‐IllániD· 1 shared Evelyne Lopez‐CrapeziD· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Andrei TurtoïORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Inferring ligand-receptor cellular networks from bulk and spatial transcriptomic datasets with BulkSignalR

Jean-Philippe Villemin, Laia Bassaganyas, Didier Pourquier, Florence Boissière‐Michot, Simon Cabello‐Aguilar, Evelyne Lopez‐Crapez, Rita Tanos, Emmanuel Cornillot, Andrei Turtoï, Jacques Colinge

BulkSignalR infers ligand-receptor networks from bulk and spatial transcriptomic data, showing higher quality inferences compared to existing tools.

Nucleic Acids Research · May 5, 2023Peer-reviewedBioinformatics

GEGVIC: A workflow to analyze Gene Expression, Genetic Variations and Immune cell Composition of tumor samples using Next Generation Sequencing data

Oriol Arqués, Solen Faidherbe, Laia Bassaganyas

GEGVIC is an R tool that simplifies cancer research analysis by integrating gene expression, genetic variation, and immune cell composition from sequencing data through a modular pipeline and GUI.

bioRxiv · Apr 5, 2023 · PreprintBioinformatics

CNApp: quantification of genomic copy number alterations in cancer and integrative analysis to unravel clinical implications

Sebastià Franch‐Expósito, Laia Bassaganyas, María Vila-Casadesús, Eva Hernández‐Illán, Roger Esteban-Fabró, Marcos Díaz‐Gay, Juan José Lozano, Antoni Castells, Josep Maria Llovet, Sergi Castellvı́-Bel, Jordi Camps

CNApp quantifies genomic copy number alterations in cancer and integrates them with clinical and molecular data to identify clinical implications.

bioRxiv · Jul 16, 2019 · PreprintGenomics

Association study of long-term kidney transplant rejection using whole-exome sequencing

Louis Gioia, Sunil M. Kurian, Tony S. Mondala, Laia Bassaganyas, Pui–Yan Kwok, Daniel R. Salomon, Andrew I. Su

This study used whole-exome sequencing to investigate genetic factors associated with long-term kidney transplant rejection but found no statistically significant associations.

bioRxiv · Oct 16, 2018 · PreprintGenetics