Author

Thomas Matthes

University Hospital of GenevaORCID 0000-0002-4875-2477Unclaimed ORCID profile · follow to get notified of new preprints

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Thomas Matthes1 paper

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:trajectory inference· 2

Frequent Co-Authors

Margarita LiarouiD· 2 shared Stéphane Marchand‐MailletiD· 2 shared

Activity by Year

2025-2026 · peak 1/yr

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2 top collaborators · 1 mutual co-author link

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2 shared papersBioinformatics

Margarita LiarouORCID

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2 papers

Recent·Most cited

TimeFlow 2: an unsupervised cell lineage detection method for flow cytometry data

Margarita Liarou, Thomas Matthes, Stéphane Marchand‐Maillet

TimeFlow 2 infers cell lineages from flow cytometry data without prior knowledge, outperforming existing methods on benchmark datasets.

Cytometry Part A · Jan 1, 2026Peer-reviewedBioinformatics

TimeFlow: a density-driven pseudotime method for flowcytometry data analysis

Margarita Liarou, Thomas Matthes, Stéphane Marchand‐Maillet

TimeFlow computes pseudotime for flow cytometry data by tracking density changes on a graph, showing good performance across patients and cell states.

Cytometry Part A · Mar 20, 2025Peer-reviewedBioinformatics