Jonathan S. Ish-Horowicz

The paper examines microbiome diversity and immune interactions in airway mucosa of healthy and asthmatic individuals, finding associations between bacterial counts and immune network eigenvectors.

This study analyzes microbial communities in CF and BX patients, finding no significant inter-kingdom interactions between fungal and bacterial communities that impact disease outcomes.

GpABC is a Julia package that implements ABC methods with Gaussian process emulation for parameter inference and model selection in systems biology models.

The paper compares mutual information estimation methods for transcriptional regulatory network inference using synthetic and real datasets, finding the B-spline estimator performs best and N1/3 bins improve accuracy.