Author

Dagmar Waltemath

Universitätsmedizin GreifswaldORCID 0000-0002-5886-5563Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Systems Biology· 4

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 3 Approach:statistical model· 2 Research Focus:database / resource· 1

Frequent Co-Authors

Adrien RougnyiD· 3 shared Alexander MazeiniD· 2 shared Danielle WelteriD· 2 shared Irina BalauriD· 2 shared Reinhard SchneideriD· 2 shared Venkata SatagopamiD· 2 shared Anatoly SorokiniD· 1 shared Christian KnüpferiD· 1 shared

Activity by Year

2016-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersSystems Biology

Adrien RougnyORCID

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4 papers

Recent·Most cited

FAIRification of computational models in biology

Irina Balaur, David Phillip Nickerson, Danielle Welter, Judith A.H. Wodke, François Ancien, Tom Gebhardt, Valentin Grouès, Henning Hermjakob, Matthias König, Nicole Erika Radde, Adrien Rougny, Reinhard Schneider, Rahuman S. Malik‐Sheriff, Kirubel Biruk Shiferaw, Melanie I. Stefan, , Dagmar Waltemath

The paper proposes adapting FAIR indicators to assess and improve the quality and transparency of computational models in biology.

bioRxiv · Mar 21, 2025 · PreprintSystems Biology

FAIR assessment of MINERVA as an opportunity to foster open science and scientific crowdsourcing in systems biomedicine

Irina Balaur, Danielle Welter, Adrien Rougny, Esther Thea Inau, Alexander Mazein, Soumyabrata Ghosh, Reinhard Schneider, Dagmar Waltemath, Marek Ostaszewski, Venkata Satagopam

The paper assesses the FAIRness of the MINERVA platform using the RDA FAIR Data Maturity Model, focusing on the Parkinson's Disease Map and the COVID-19 Disease Map.

bioRxiv · Aug 28, 2024 · PreprintSystems Biology

SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks

Adrien Rougny, Vasundra Touré, John S. Albanese, Dagmar Waltemath, Denis Shirshov, Anatoly Sorokin, Gary D. Bader, Michael L. Blinov, Alexander Mazein

The paper introduces SBGN bricks and their ontology to provide structured semantics for recurring molecular network concepts, enabling better annotation and construction of molecular maps.

Briefings in Bioinformatics · Feb 4, 2021Peer-reviewedSystems Biology

Notions of similarity for computational biology models

Ron Henkel, Robert Hoehndorf, Tim Kacprowski, Christian Knüpfer, Wolfram Liebermeister, Dagmar Waltemath

This paper introduces a general framework for quantifying similarity between computational biology models and discusses its applications in model management and comparison.

bioRxiv · Mar 21, 2016 · PreprintSystems Biology