Jun Ying Xiao

Cell cycle-driven epigenetic resetting maintains stem cell fate for shoot branching

The paper shows that cell cycle progression in Arabidopsis stem cells maintains pluripotency by resetting epigenetic marks and silencing fate-determining genes through PRC2 recruitment.

Spatial Transcriptomics Reveals Expression Gradients in Developing Wheat Inflorescences at Cellular Resolution

This study uses spatial transcriptomics to analyze gene expression gradients in wheat inflorescences, revealing dynamic spatio-temporal organization along the apical-basal axis.

Integrative Omics reveals genetic basis and TaMYB7-A1's function in wheat WUE and drought resilience

This study integrates multi-omic data to identify genetic basis and functional role of TaMYB7-A1 in wheat water use efficiency and drought resilience.

Reshaping epigenomic landscapes in facilitating the speciation of bread wheat

This study examines how polyploidization affects epigenetic regulation and gene expression in wheat, identifying dynamic enhancer regions and coevolving transcription factors that influence spike development.

TAC-C uncovers open chromatin interaction in crops and SPL-mediated photosynthesis regulation

The paper introduces TAC-C, a method combining ATAC-seq and Hi-C to study chromatin interactions in crops, revealing SPL-mediated photosynthesis regulation and chromatin loop structures.

Dynamic regulation of H2A.Zub and H3K27me3 by ambient temperature in plant cell fate determination

The paper shows that low temperature restores developmental defects in PRC2 mutants by promoting H2A.Zub deposition at embryonic genes, compensating for H3K27me3 loss and silencing these genes for post-germination development.

Natural variations of TaMYB7-A1 regulate PHS resistance and specify wheat geographic adaptation

This study identifies TaMYB7-A1 haplotypes that regulate PHS resistance and wheat geographic adaptation through ABA signaling and gene expression mechanisms.

TabHLH27 orchestrates root growth and drought tolerance to enhance water use efficiency in wheat

This study identifies TabHLH27-A1 as a key gene influencing root growth and drought tolerance in wheat, improving water use efficiency through genetic manipulation.

Uncovering transcriptional regulatory network during regeneration for boosting wheat transformation

This study identifies key transcriptional factors that enhance wheat transformation efficiency by analyzing multi-omic data during shoot regeneration.

COLT-Viz: Interactive Visualization of Antibody Lineage Trees

COLT-Viz is an interactive tool for visualizing and editing antibody lineage trees with additional biological constraints and multi-dimensional data.