Author

Thérèse Ouellet

Agriculture and Agri-Food CanadaORCID 0000-0002-6380-9806Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:plant (other)· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Lipu WangiD· 2 shared Pierre R. FobertiD· 2 shared Yifeng LiiD· 2 shared Youlian PaniD· 2 shared Ziying LiuiD· 2 shared Anuradha SurendraiD· 1 shared Nora A. ForoudiD· 1 shared Ravinder K. GoyaliD· 1 shared

Activity by Year

2019-2019 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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2 shared papersBioinformatics

Lipu WangORCID

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2 papers

Recent·Most cited

Strategy in wheat-Fusarium dual-genome RNA-seq data processing

Ziying Liu, Yifeng Li, Youlian Pan, Lipu Wang, Thérèse Ouellet, Pierre R. Fobert

This study compares alignment strategies for dual-genome RNA-seq data from wheat and Fusarium, finding that combo-genome alignment improves mapping quality.

bioRxiv · Dec 16, 2019 · PreprintBioinformatics

Differential expression feature extraction (DEFE) and its application in RNA-seq data analysis

Youlian Pan, Yifeng Li, Ziying Liu, Anuradha Surendra, Lipu Wang, Nora A. Foroud, Ravinder K. Goyal, Thérèse Ouellet, Pierre R. Fobert

The paper introduces DEFE, a method to extract differential expression patterns from RNA-seq data, and applies it to identify genes associated with wheat resistance to Fusarium head blight.

bioRxiv · Jan 30, 2019 · PreprintGenomics