Hao Chen

RiboRep: Replicate-Aware Cross-Modal Transformers for Codon-Resolved Ribosome Density Prediction

RiboRep predicts codon-resolved ribosome density by integrating RNA sequences and ribosome occupancy signals using a cross-modal transformer framework, achieving strong performance across multiple species.

PAG-Agent: a biologist-oriented research assistant for context-aware pathway-level analysis and interpretation

PAG-Agent performs pathway-level analysis and interpretation of transcriptomic data, identifying biologically relevant pathways and generating hypotheses across datasets and conditions.

A Multi-Agent RAG Framework for Biomedical Literature Analysis

This paper introduces ET-RAG, a RAG framework that improves biomedical question answering by incorporating evidence quality and recency into retrieval scoring, outperforming standard cosine similarity and full-context baselines.

Developing tree improvement strategies for challenging environmental stresses under global climate change: a review from traditional tree breeding to genomics of adaptive traits for the quaking aspen

This paper reviews tree improvement strategies for quaking aspen under climate change, focusing on adaptive traits and their genetic and environmental interactions.