Author

Anestis Gkanogiannis

International Center for Tropical AgricultureORCID 0000-0002-6441-0688Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Research Focus:differential expression· 2 Research Focus:imputation· 2 Research Focus:variant calling· 2 Research Focus:clustering· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Christopher FragosoiD· 2 shared Jean‐François RamiiD· 2 shared Mathias LorieuxiD· 2 shared Alice BoizetiD· 1 shared Cécile TriayiD· 1 shared Hifzur RahmaniD· 1 shared Luís Augusto Becerra López‐LavalleiD· 1 shared Maher KabshawiiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersBioinformatics

Christopher FragosoORCID

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3 papers

Recent·Most cited

Uncovering the Genetic Blueprint of the UAE's National Tree: Genomic Evidence to Guide Prosopis cineraria (L.) Druce Conservation

Anestis Gkanogiannis, Salama Rashed Obaid Almansoori, Maher Kabshawi, Mohammed Shahid, Saif R. Almansoori, Hifzur Rahman, Luís Augusto Becerra López‐Lavalle

This study presents the first population genomics analysis of Prosopis cineraria in the UAE, identifying genetic clusters and diversity patterns to inform conservation strategies.

Plants · Sep 25, 2025Peer-reviewedGenomics

Fast and accurate imputation of genotypes from noisy low-coverage sequencing data in bi-parental populations

Cécile Triay, Alice Boizet, Christopher Fragoso, Anestis Gkanogiannis, Jean‐François Rami, Mathias Lorieux

NOISYmputer improves genotype and recombination breakpoint imputation from noisy low-coverage sequencing data, outperforming existing tools in accuracy and efficiency.

bioRxiv · Mar 13, 2024 · PreprintBioinformatics

NOISYmputer: genotype imputation in bi-parental populationsfor noisy low-coverage next-generation sequencing data

Mathias Lorieux, Anestis Gkanogiannis, Christopher Fragoso, Jean‐François Rami

NOISYmputer improves genotype imputation for noisy low-coverage sequencing data in bi-parental populations by addressing missing data, errors, and heterozygous loci.

bioRxiv · Jun 3, 2019 · PreprintBioinformatics