Author

Jia‐Yu Xue

Nanjing Agricultural UniversityORCID 0000-0002-7128-9935Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Evolutionary Biology· 1 Genomics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:phylogenetics / evolution· 2 Organism:plant (other)· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:gene regulatory network inference· 1 Organism:multiple species· 1

Frequent Co-Authors

M. Eric SchranziD· 2 shared Tao ZhaoiD· 2 shared Yves Van de PeeriD· 2 shared Arthur ZwaenepoeliD· 1 shared Bocheng GuoiD· 1 shared Changfei GuaniD· 1 shared Fan YangiD· 1 shared Fei CheniD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersEvolutionary Biology

M. Eric SchranzORCID

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3 papers

Recent·Most cited

S-RNase Evolution in Self-Incompatibility: Phylogenomic Insights into Synteny with S-Like Genes

Yunxiao Liu, Yangxin Zhang, Songxue Han, Bocheng Guo, Jiakai Liang, Ze Yu, Fan Yang, Yaqiang Sun, Jia‐Yu Xue, Zongcheng Lin, M. Eric Schranz, Changfei Guan, Fengwang Ma, Tao Zhao

This study investigates the evolutionary origin and genomic trajectory of S-RNase genes in eudicots using phylogenetic and synteny analyses across 130 angiosperm genomes.

PLANT PHYSIOLOGY · Feb 20, 2025Peer-reviewedEvolutionary Biology

Comprehensive regulatory networks for tomato organ development based on the genome and RNAome of microTom tomato

Jia‐Yu Xue, Hai‐Yun Fan, Zhen Zeng, Yuhan Zhou, Shuai‐Ya Hu, Sai‐Xi Li, Ying‐Juan Cheng, Xiangru Meng, Fei Chen, Zhu‐Qing Shao, Yves Van de Peer

The paper constructs gene co-expression networks and non-coding RNA interactions in microTom tomato using its genome and RNA-seq data, and establishes a database for research.

Horticulture Research · Jul 19, 2023Peer-reviewedPlant Biology

Novel phylogeny of angiosperms inferred from whole-genome microsynteny analysis

Tao Zhao, Jia‐Yu Xue, Shu‐Min Kao, Zhen Li, Arthur Zwaenepoel, M. Eric Schranz, Yves Van de Peer

The paper infers a novel angiosperm phylogeny using whole-genome microsynteny analysis, revealing new relationships among key clades.

bioRxiv · Jan 15, 2020 · PreprintGenomics