Author

Qilin Li

California Institute of TechnologyORCID 0000-0002-7191-8965Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Assay:imaging· 1 Organism:multiple species· 1 Research Focus:software / tool· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Ada Ates· 1 shared Ahamed Iqbal· 1 shared Alexander Pearson-Goulart· 1 shared Caitlin Brown· 1 shared Changhua YuiD· 1 shared David Van ValeniD· 1 shared Edward Pao· 1 shared Elora Pradhan· 1 shared

Activity by Year

2023-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Ada Ates

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1 paper

Recent·Most cited

CellSAM: A Foundation Model for Cell Segmentation

Uriah Israel, Markus Marks, Rohit Dilip, Qilin Li, Changhua Yu, Emily Laubscher, Ahamed Iqbal, Elora Pradhan, Ada Ates, Martin Abt, Caitlin Brown, Edward Pao, Shenyi Li, Alexander Pearson-Goulart, Pietro Perona, , David Van Valen

Bounding boxes from a transformer detector let the Segment Anything Model segment cells automatically; one generalist model beats generalist Cellpose and matches inter-annotator agreement across mammalian, yeast and bacterial images.

bioRxiv · Nov 17, 2023 · PreprintBioinformatics✦ In-depth digest