Author
University of California, DavisORCID 0000-0002-7388-421XUnclaimed ORCID profile · follow to get notified of new preprints
9 papers
Recent·Most cited
David Luke Field, Sean Stankowski, Taylor E. Reiter, Jitka Polechová, Desmond J. Bradley, Daniel M. Richardson, Annabel C. Whibley, Arka Pal, Daria Shipilina, Louis Boell (24386755), Melinda Pickup, Yongbiao Xue, Enrico Coen, Nick Barton
PLoS Genetics · Jul 13, 2026Peer-reviewedEvolutionary Biology
Taylor E. Reiter, Luiz C. Irber, Alicia A. Gingrich, Dylan Haynes, N. Tessa Pierce‐Ward, Phillip Brooks, Yosuke Mizutani, Dominik Moritz, Felix Reidl, Amy D. Willis, Blair D. Sullivan, C. Titus Brown
The paper identifies five bacterial strains associated with Crohn's disease using a novel method combining machine learning and assembly graphs for metagenomic analysis.
bioRxiv · Jun 30, 2022 · PreprintBioinformatics
Taylor E. Reiter, N. Tessa Pierce‐Ward, Luiz C. Irber, Olga Borisovna Botvinnik, C. Titus Brown
This paper introduces a method using protein k-mers to perform metapangenomics without assembly, identifying strain fluctuations in stool metagenomes during antibiotic treatment.
bioRxiv · Jun 27, 2022 · PreprintBioinformatics
Alexandra J. Lee, Georgia Doing, Samuel L. Neff, Taylor E. Reiter, Deborah A. Hogan, Casey S. Greene
The paper analyzes transcriptional patterns of core and accessory genes in P. aeruginosa strains using a transcriptome compendium, revealing stable core gene expression patterns across strains.
bioRxiv · Apr 14, 2022 · PreprintBioinformatics
Luiz C. Irber, Phillip Brooks, Taylor E. Reiter, N. Tessa Pierce‐Ward, Mahmudur Rahman Hera, David Koslicki, C. Titus Brown
Greedy minimum set cover over FracMinHash k-mer sketches selects a small set of reference genomes explaining a metagenome, supporting species-level taxonomic profiling and choice of genomes for read mapping.
bioRxiv · Jan 11, 2022 · PreprintBioinformatics✦ In-depth digest
Taylor E. Reiter, Phillip Brooks, Luiz C. Irber, Shannon E K Joslin, Charles Reid, Camille Scott, C. Titus Brown, N. Tessa Pierce‐Ward
The paper provides strategies for using workflow systems to streamline biological data analysis, emphasizing reproducibility and scalability in high-throughput sequencing projects.
GigaScience · Jan 1, 2021Peer-reviewedBioinformatics
C. Titus Brown, Dominik Moritz, Michael P. O’Brien, Felix Reidl, Taylor E. Reiter, Blair D. Sullivan
The paper introduces a system to recover missing genomic content from metagenomic data by analyzing subgraphs in assembly graphs.
Genome biology · Jul 6, 2020Peer-reviewedBioinformatics
N. Tessa Pierce‐Ward, Luiz C. Irber, Taylor E. Reiter, Phillip Brooks, C. Titus Brown
The paper introduces sourmash, a software package that uses MinHash to create compressed sequence signatures for efficient large-scale sequence comparison and database searching.
F1000Research · Jul 4, 2019Peer-reviewedBioinformatics
Taylor E. Reiter, C. Titus Brown
The paper identifies microbial contamination in the domesticated olive genome, primarily from Aureobasidium pullulans, and notes its potential impact on downstream analyses.
bioRxiv · Dec 17, 2018 · PreprintGenomics