Benchmarking software to predict antibiotic resistance phenotypes in shotgun metagenomes using simulated data
Emily F. Wissel, Brooke M. Talbot, Noriko A. B. Toyosato, Robert A. Petit, Vicki Hertzberg, Anne Lang Dunlop, Timothy D. Read
This study benchmarks nine bioinformatics tools for detecting AMR genes in shotgun metagenomic data using simulated samples and a custom pipeline.
bioRxiv · Jan 13, 2022 · PreprintBioinformatics