Author

Yang Qi

Northwestern Polytechnical UniversityORCID 0000-0002-7936-5680Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 2 Approach:deep learning· 2 Approach:transformer / foundation model· 1

Frequent Co-Authors

Fuhao ZhangiD· 2 shared Xingyu LiaoiD· 2 shared Xuequn ShangiD· 2 shared Yingfu WuiD· 2 shared Yiqi CheniD· 2 shared Meihong GaoiD· 1 shared Yanyan LiiD· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Fuhao ZhangORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BERTE：High-precision hierarchical classification of transposable elements by a transfer learning method with BERT pre-trained model and convolutional neural network

Yiqi Chen, Yang Qi, Yingfu Wu, Fuhao Zhang, Xingyu Liao, Xuequn Shang

BERTE improves TE classification accuracy using BERT and CNN, achieving up to 21% higher F1-score than existing methods.

bioRxiv · Jan 28, 2024 · PreprintBioinformatics

Comprehensive Hierarchical Classification of Transposable Elements based on Deep Learning

Yang Qi, Yiqi Chen, Yingfu Wu, Yanyan Li, Meihong Gao, Fuhao Zhang, Xingyu Liao, Xuequn Shang

This paper introduces CREATE, a deep learning framework for TE classification, and WebDLTE, a web platform for real-time TE annotation, showing improved performance over existing tools.

bioRxiv · Jan 27, 2024 · PreprintBioinformatics