Author

Rui Qing

Shanghai Jiao Tong UniversityORCID 0000-0002-7952-2295Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioengineering· 1 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:protein sequence· 2 Research Focus:benchmarking· 1 Research Focus:protein design· 1

Frequent Co-Authors

Edward CheniD· 1 shared Jiahang CaoiD· 1 shared Lingfeng ZhangiD· 1 shared Qiang ZhangiD· 1 shared Renjing XuiD· 1 shared Shiyi Liu· 1 shared Sitao ZhangiD· 1 shared Sitao ZhangiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Edward ChenORCID

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2 papers

Recent·Most cited

PTM-dCN: Latent Space Control for Post-translational Modification-aware Protein Design

Sitao Zhang, Rui Qing, Tianming Huang, Edward Chen

This paper introduces a deep learning framework for designing proteins with site-specific post-translational modifications using latent diffusion models and a PTM-aware language model.

bioRxiv · May 11, 2026 · PreprintBioinformatics

Recursive Cleaning for Large-scale Protein Data via Multimodal Learning

Zixuan Jiang, Sitao Zhang, Jiahang Cao, Qiang Zhang, Shiyi Liu, Yuetong Fang, Lingfeng Zhang, Rui Qing, Renjing Xu

The paper introduces ProtAC, a framework for cleaning large protein datasets using multimodal learning, achieving improved function prediction and a cleaned UniRef50 dataset.

bioRxiv · Oct 8, 2024 · PreprintBioengineering