Author

Alexander Gawronski

Simon Fraser UniversityORCID 0000-0002-8068-6422Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:proteomics· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Colin C. CollinsiD· 2 shared S. Cenk ŞahinalpiD· 2 shared Andrew McPhersoniD· 1 shared Arul M. ChinnaiyaniD· 1 shared Faraz HachiD· 1 shared Felix Yi-Chung FengiD· 1 shared Haixu TangiD· 1 shared Ibrahim NumanagićiD· 1 shared

Activity by Year

2017-2018 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Colin C. CollinsORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedMar 27, 2018

MechRNA: prediction of lncRNA mechanisms from RNA-RNA and RNA-protein interactions

Alexander Gawronski, Michaël Uhl, Yajia Zhang…·Rolf Backofen

MechRNA predicts lncRNA mechanisms by integrating RNA-RNA and RNA-protein interaction predictions to identify potential targets and mechanisms for cancer-related lncRNAs.

100 citations

statistical modelgene regulatory network inference

BioinformaticsBioinformaticsPeer-reviewedDec 15, 2017

Computational proteogenomic identification and functional interpretation of translated fusions and micro structural variations in cancer

Yen-Yi Lin, Alexander Gawronski, Faraz Hach…·S. Cenk Şahinalp

The paper introduces a computational framework integrating genomic, transcriptomic, and proteomic data to identify and interpret translated fusions and micro structural variations in cancer, finding many novel peptides and private aberrations in breast cancer.

11 citations

humanwhole-genome sequencing