Author

Kazuki Nakanishi

Institute of Science TokyoORCID 0000-0002-8069-4780Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Hideyuki ShimizuiD· 2 shared Takahide Suzuki· 1 shared Takashi Fujiwara· 1 shared

Activity by Year

2026-2026 · peak 2/yr

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3 top collaborators · 3 mutual co-author links

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2 shared papersSystems Biology

Hideyuki ShimizuORCID

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2 papers

Recent·Most cited

Axolotl regeneration reveals a dormant cis-regulatory grammar conserved across vertebrate genomes

Takashi Fujiwara, Kazuki Nakanishi, Takahide Suzuki, Hideyuki Shimizu

The paper identifies a conserved cis-regulatory grammar in axolotl limb regeneration and shows it is dormant in mammalian genomes, suggesting a potential for reactivating regenerative programs.

bioRxiv · Jul 15, 2026 · PreprintSystems Biology

Integrating virtual cell modeling with patient-derived transcriptomics to uncover target signals in rheumatoid arthritis

Kazuki Nakanishi, Hideyuki Shimizu

The paper evaluates virtual cell models in rheumatoid arthritis by comparing empirical and virtual perturbations in patient-derived T cells, finding preserved target priorities with disease-specific shifts.

bioRxiv · Apr 22, 2026 · PreprintImmunology