Wojciech Maciej Karlowski

MiRNAs differentially expressed in vegetative and reproductive organs of Marchantia polymorpha, insights into their expression pattern, gene structures and function

This study identifies liverwort-specific miRNAs in Marchantia polymorpha, their expression patterns, gene structures, and potential targets, suggesting roles in developmental regulation.

TRGdb: a universal resource for exploration of taxonomically restricted genes in bacteria

TRGdb provides a database of taxonomically restricted genes in bacteria, offering sequence information and features for research.

Taxonomy-aware, sequence similarity ranking reliably predicts phage-host relationships

Phirbo improves phage-host relationship prediction by integrating sequence similarity and bacterial relatedness, outperforming existing tools in precision and recall.

Benchmarking of alignment-free sequence comparison methods

This paper benchmarks alignment-free sequence comparison methods across five research applications and provides a web resource for evaluating and comparing these methods.