Author

Dehan Cai

City University of Hong KongORCID 0000-0002-8148-4574Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:bulk RNA-seq· 1 Assay:long-read sequencing· 1 Organism:virus· 1

Frequent Co-Authors

Yanni SuniD· 2 shared Herui LiaoiD· 1 shared Jonathan Daniel IpiD· 1 shared Kelvin Kai‐Wang ToiD· 1 shared Syed Muhammad AbdullahiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 7 mutual co-author links

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2 shared papersBioinformatics

Yanni SunORCID

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2 papers

Recent·Most cited

SLAFIT: Viral fitness inference and structural variant detection from TGS data

Syed Muhammad Abdullah, Dehan Cai, Jonathan Daniel Ip, Kelvin Kai‐Wang To, Yanni Sun

SLAFIT infers viral fitness and detects structural variants from third-generation sequencing data by analyzing linkage disequilibrium and haplotype frequencies.

bioRxiv · Oct 16, 2026 · PreprintBioinformatics

VirStrain: a strain identification tool for RNA viruses

Herui Liao, Dehan Cai, Yanni Sun

VirStrain identifies viral strains from short reads using a greedy covering algorithm, outperforming existing tools on simulated and real data.

Genome biology · Jan 31, 2022Peer-reviewedBioinformatics