Author

Raphy Zarecki

Agricultural Research OrganizationORCID 0000-0002-8567-2425Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Research Focus:variant calling· 1 Organism:virus· 1

Frequent Co-Authors

Aaron A. BestiD· 1 shared Adam P. ArkiniD· 1 shared Andrew FreiburgeriD· 1 shared Christopher S. HenryiD· 1 shared Daniella GatiD· 1 shared Filipe LiuiD· 1 shared Hanan EizenbergiD· 1 shared Hyun‐Seob SongiD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperSystems Biology

Aaron A. BestORCID

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2 papers

Recent·Most cited

ModelSEED v2: High-throughput genome-scale metabolic model reconstruction with enhanced energy biosynthesis pathway prediction

José P. Faria, Filipe Liu, Janaka N. Edirisinghe, Nidhi Gupta, Samuel M. D. Seaver, Andrew Freiburger, Vibhav Setlur, Qizhi Zhang, Pamela B. Weisenhorn, Neal R. Conrad, Raphy Zarecki, Hyun‐Seob Song, Matthew DeJongh, Aaron A. Best, Robert W. Cottingham, , Christopher S. Henry

ModelSEED v2 improves genome-scale metabolic model reconstruction with enhanced energy metabolism and better pathway curation, leading to more accurate and comprehensive models.

bioRxiv · Oct 4, 2023 · PreprintSystems Biology

Genome-Scale reconstruction of Paenarthrobacter aurescens TC1 metabolic model towards the study of atrazine bioremediation

Shany Ofaim, Raphy Zarecki, Seema Porob, Daniella Gat, Tamar Lahav, Xihui Xu, Yechezkel Kashi, Radi Aly, Jiandong Jiang, Hanan Eizenberg, Zeev Ronen, Shiri Freilich

The paper constructs a genome-scale metabolic model for Paenarthrobacter aurescens TC1 to predict and optimize atrazine degradation under various media conditions.

Scientific Reports · Aug 3, 2020Peer-reviewedBioinformatics