Author

Elena Biagi

University of HelsinkiORCID 0000-0002-8573-3603Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Assay:metagenomics· 1 Research Focus:software / tool· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Jarno AlankoiD· 2 shared Simon J. PuglisiiD· 2 shared Tommi MäkliniD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

3 top collaborators · 3 mutual co-author links

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2 shared papersBioinformatics

Jarno AlankoORCID

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2 papers

Recent·Most cited

Sequence alignment with k-bounded matching statistics

Tommi Mäklin, Jarno Alanko, Elena Biagi, Simon J. Puglisi

This paper introduces a novel algorithm for approximate local alignment search using k-bounded matching statistics, showing it is as fast and accurate as state-of-the-art tools in bacterial genomics tasks.

bioRxiv · May 19, 2025 · PreprintBioinformatics

Finimizers: Variable-length bounded-frequency minimizers for k-mer sets

Jarno Alanko, Elena Biagi, Simon J. Puglisi

This paper introduces finimizers, frequency-bounded minimizers for k-mer sets, to address frequent minimizer issues in indexing, showing improved query times with a prototype implementation.

bioRxiv · Feb 19, 2024 · PreprintBioinformatics