Author

Baskar Ganapathysubramanian

Iowa State UniversityORCID 0000-0002-8931-4852Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Baskar Ganapathysubramanian1 paper

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 3 Approach:machine learning (classical)· 2 Assay:bulk RNA-seq· 1 Research Focus:GWAS / association mapping· 1 Assay:imaging· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Asheesh Kumar SinghiD· 2 shared Soumik SarkariD· 2 shared Aaron Joel LorenziD· 1 shared Arti SinghiD· 1 shared Hernan Torres PaciniD· 1 shared Johnathon M. Shook· 1 shared Kyle A. Parmley· 1 shared Linjiang WuiD· 1 shared

Activity by Year

2018-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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2 shared papersPlant Biology

Asheesh Kumar SinghORCID

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3 papers

Recent·Most cited

AI-assisted Image-Based Phenotyping Reveals Genetic Architecture of Pod Traits in Mungbean (Vigna radiata L.)

Venkata Naresh Boddepalli, Talukder Zaki Jubery, Somak Dutta, Baskar Ganapathysubramanian, Arti Singh

The paper uses AI-assisted image phenotyping to analyze pod traits in mungbean, identifies SNPs associated with pod morphology, and demonstrates improved genomic prediction accuracy.

bioRxiv · Nov 6, 2025 · PreprintGenomics

Genomic and Phenomic Prediction for Soybean Seed Yield, Protein, and Oil

Liza Van der Laan, Kyle A. Parmley, Mojdeh Saadati, Hernan Torres Pacin, Srikanth Panthulugiri, Soumik Sarkar, Baskar Ganapathysubramanian, Aaron Joel Lorenz, Asheesh Kumar Singh

This paper compares genomic and phenomic prediction for soybean seed yield, protein, and oil content, finding phenomic prediction outperforms genomic for yield while genomic is better for protein and oil.

The Plant Genome · Feb 19, 2025Peer-reviewedPlant Biology

Integrating genotype and weather variables for soybean yield prediction using deep learning

Johnathon M. Shook, Linjiang Wu, Tryambak Gangopadhyay, Baskar Ganapathysubramanian, Soumik Sarkar, Asheesh Kumar Singh

This paper uses deep learning to predict soybean yield by integrating genotype and weather data from historical trials.

bioRxiv · May 25, 2018 · PreprintBioinformatics