Author

Veda D. Khadka

Massachusetts Institute of TechnologyORCID 0000-0002-8958-3489Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:metagenomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Arielle D. TrippiD· 1 shared Christopher P. MancusoiD· 1 shared Evan B. QuiD· 1 shared Jacob S. BakeriD· 1 shared Laura MarkeyiD· 1 shared Tami D. LiebermaniD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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1 shared paperMicrobiology

Arielle D. TrippORCID

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1 paper

Recent·Most cited

Intraspecies associations from strain-rich metagenome samples

Evan B. Qu, Jacob S. Baker, Laura Markey, Veda D. Khadka, Christopher P. Mancuso, Arielle D. Tripp, Tami D. Lieberman

PHLAME improves strain-resolved metagenomic analysis by combining reference-based methods with novelty detection, revealing new intraspecies associations in human microbiomes.

Cell Reports · Aug 1, 2025Peer-reviewedMicrobiology