Author

Mark Maher Ebeid

University of PittsburghORCID 0000-0002-9113-7082Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:benchmarking· 2 Assay:ChIP-seq· 2 Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Approach:contrastive learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Organism:human· 1

Frequent Co-Authors

Ali Tuğrul BalcıiD· 2 shared Dennis KostkaiD· 2 shared Maria D. ChikinaiD· 2 shared Panayiotis V. BenosiD· 2 shared

Activity by Year

2023-2026 · peak 1/yr

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4 top collaborators · 6 mutual co-author links

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2 shared papersGenomics

Ali Tuğrul BalcıORCID

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2 papers

Recent·Most cited

Frustratingly easy domain adaptation for cross-species transcription factor binding prediction

Mark Maher Ebeid, Ali Tuğrul Balcı, Maria D. Chikina, Panayiotis V. Benos, Dennis Kostka

The paper introduces MORALE, a domain adaptation framework for cross-species TF binding prediction, achieving state-of-the-art performance without adversarial training.

Lecture notes in computer science · Jan 1, 2026Peer-reviewedGenomics

An intrinsically interpretable neural network architecture for sequence to function learning

Ali Tuğrul Balcı, Mark Maher Ebeid, Panayiotis V. Benos, Dennis Kostka, Maria D. Chikina

The paper introduces tiSFM, an interpretable neural network for sequence-to-function learning, which outperforms existing models in predicting open chromatin and transcription factor activities.

Bioinformatics · Jun 1, 2023Peer-reviewedBioinformatics