Ikuo Uchiyama

Modular core network constructed from Escherichia coli transcriptome datasets using a hypergraph-based pan-network approach

The paper constructs a modular core network from Escherichia coli transcriptome datasets using a hypergraph-based pan-network approach, revealing operon-related modules and their dynamic reorganization.

A hierarchical orthology framework reveals viral carbohydrate-active genes across the global virosphere

The paper identifies viral carbohydrate-active genes across diverse viral lineages using a hierarchical orthology framework and reveals their evolutionary and functional diversity.

A comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology

The paper constructs a comprehensive transcriptome reference for the Iberian ribbed newt, identifying gene modules and evolutionary features, and provides data for future research.