Author

Sefika Banu Ozkan

Arizona State UniversityORCID 0000-0002-9351-3758Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Approach:deep learning· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Danis Yangaliev· 1 shared Eleni PanagiotouiD· 1 shared Jason YalimiD· 1 shared Paulina Malatesta· 1 shared Roshita Chandnani· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 6 mutual co-author links

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1 shared paperBiophysics

Danis Yangaliev

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2 papers

Recent·Most cited

Entanglement-based continuum conformational landscape of proteins

Paulina Malatesta, Roshita Chandnani, Jason Yalim, Sefika Banu Ozkan, Eleni Panagiotou

The paper introduces mathematical topology metrics to quantify protein structure entanglement and represents the proteome in a continuous 3D space, showing structural and functional correlations.

bioRxiv · Aug 21, 2026 · PreprintMolecular Biology

Coarse-Grained RNA Model for the Martini 3 Force Field

Danis Yangaliev, Sefika Banu Ozkan

This paper introduces a new coarse-grained RNA model compatible with Martini 3, showing improved accuracy and stability for simulating RNA and RNA-protein complexes.

Biophysical Journal · Aug 5, 2025Peer-reviewedBiophysics