Vassiliki A. Iconomidou

LiGIoNs: A Computational Method for the Detection and Classification of Ligand-Gated Ion Channels

LiGIoNs is a pHMM-based method for detecting and classifying ligand-gated ion channels, outperforming existing methods and enabling subfamily classification.

Linear B-cell epitope prediction for in silico vaccine design: a performance review of methods available via command-line interface

This paper reviews linear B-cell epitope prediction methods available via command-line interface and introduces a consensus classifier to improve performance for vaccine design.

Visualization and Analysis of the Interaction Network of Proteins Associated with Blood-cell targeting Autoimmune Diseases

This study identifies candidate proteins and connectors in the BLAD interactome using network analysis and clustering.

PerMemDB: a database for eukaryotic peripheral membrane proteins

PerMemDB is a database of eukaryotic peripheral membrane proteins, containing 241,173 entries from 1,216 organisms, annotated with interaction data and domain predictions using MBPpred.

AmyCo: the Amyloidoses Collection

AmyCo is a database classifying 74 amyloid-related diseases into amyloidosis and clinical conditions associated with amyloidosis, providing detailed annotations and references to external databases.

Analysis of Single Nucleotide Polymorphisms in human Voltage-Gated Ion Channels

The paper analyzes SNPs in VGICs to identify disease-associated mutations and their functional impact on ion channel structure and function.