Author

Deniz Sezer

Department of Pharmacology, UTSW Medical Center, TX 75390, USAORCID 0000-0002-9635-4369Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:metabolomics· 1 Approach:variational autoencoder· 1

Frequent Co-Authors

Erdal ToprakiD· 1 shared Martin J. LercheriD· 1 shared Peter Schubert· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

3 top collaborators · 1 mutual co-author link

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Erdal ToprakORCID

Author profile →

2 papers

Recent·Most cited

Counting-based inference of mutant growth rates from pooled sequencing across growth regimes

Deniz Sezer, Erdal Toprak

The paper develops methods to infer mutant growth rates from pooled sequencing data by modeling growth and noise, improving accuracy over existing approaches.

bioRxiv · Oct 10, 2025 · PreprintBioinformatics

Structure of autosynthetic models of balanced cell growth and numerical optimization of their growth rate

Deniz Sezer, Peter Schubert, Martin J. Lercher

This paper develops numerical methods to optimize the growth rate of genome-scale metabolic models by treating enzyme concentrations as variables and clarifying simplifying assumptions in the optimization framework.

bioRxiv · Sep 19, 2020 · PreprintSystems Biology