Akanksha Sharma

PTF-Vac: An explainable and generative deep co-learning encoders-decoders system for ab-initio discovery of plant transcription factor binding sites

PTF-Vac discovers plant transcription factor binding sites using a generative deep learning model that outperforms existing methods and is independent of species and predefined motifs.

Decoding stress specific transcriptional regulation by causality aware Graph-Transformer deep learning

The paper introduces CTF-BIND, a deep learning framework that detects TF binding from RNA-seq data without ChIP-seq, achieving 93% accuracy in plant stress response analysis.