Deep Learning Driven Cell-Type-Specific Embedding for Inference of Single-Cell Co-expression Networks
Yuting Bai, Kun Qian, Qiang Lin, Wei Fan, Rui Qin, Bing He, Feng Ding, Wanfei Liu, Peng Cui
DeepCSCN infers cell-type-specific co-expression networks from scRNA-seq data, outperforming existing methods and identifying 280 cell-specific gene modules across 27 cell types.
bioRxiv · Aug 12, 2024 · PreprintBioinformatics