Author

Shashank Jatav

ORCID 0000-0002-9680-1747Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:large language model· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Arman Kazmi· 2 shared Deepshikha SinghiD· 2 shared Soumya Luthra· 2 shared Abhishek JhaiD· 1 shared Freda D. MilleriD· 1 shared Saksham Malhotra· 1 shared Shefali LathwaliD· 1 shared Sidhartha GoyaliD· 1 shared

Activity by Year

2020-2025 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 12 mutual co-author links

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2 shared papersBioinformatics

Arman Kazmi

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

DEEPGEOSEARCH: LLM-POWERED SCHEMALESS RETRIEVALFOR BIOMEDICAL DATA DISCOVERY

Deepshikha Singh, Shashank Jatav, Shefali Lathwal, Arman Kazmi, Soumya Luthra

DeepGEOSearch improves biomedical dataset discovery by using an LLM-powered schema-less retrieval system that matches natural-language queries to datasets with high precision and recall.

bioRxiv · Dec 27, 2025 · PreprintBioinformatics

Beyond the Hype: The Complexity of Automated Cell Type Annotations with GPT-4

Arman Kazmi, Deepshikha Singh, Shashank Jatav, Soumya Luthra

This paper evaluates GPT-4's performance in automated cell type annotation on single-cell RNA-seq data, identifies its limitations, and introduces an improved approach using RAG and new evaluation metrics.

bioRxiv · Feb 11, 2025 · PreprintBioinformatics

Inferring metabolic rewiring in embryonic neural development using single cell data

Shashank Jatav, Saksham Malhotra, Freda D. Miller, Abhishek Jha, Sidhartha Goyal

This paper introduces scMetNet, a method to analyze metabolic rewiring in single-cell data, applied to murine embryonic neural development to identify key metabolic pathways and sub-networks involved in stem cell differentiation.

bioRxiv · Sep 3, 2020 · PreprintSystems Biology