Author

Valeriy Titarenko

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University of ManchesterORCID 0000-0002-9744-8228Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 1

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Sofya S. TitarenkoiD· 1 shared

Activity by Year

2021-2021 · peak 1/yr

1 paper

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VSTseed: periodic spaced seeds for reads with substitutions

Valeriy Titarenko, Sofya S. Titarenko

The paper introduces VSTseed, a method for generating periodic spaced seeds that can locate reads with substitutions in a reference sequence, and provides SIMD instructions for efficient processing.

bioRxiv · Jun 9, 2021 · PreprintBioinformatics