Author

Rémi Mathieu

InsermORCID 0000-0002-9887-6400Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:mouse· 3 Approach:statistical model· 3 Research Focus:batch correction / integration· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Alfonso RepresaiD· 2 shared Antoine de ChevignyiD· 2 shared Carlos CardosoiD· 2 shared Emilie Pallesi‐PocachardiD· 2 shared A. GélotiD· 1 shared Alana A. OyamaiD· 1 shared Andreas BosioiD· 1 shared Angela P. AyalaiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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2 shared papersNeuroscience

Alfonso RepresaORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintFeb 10, 2026

SCALPEL: A pipeline for processing large-scale spatial transcriptomics data

Michael Kunst, Lindsey G. Ching, Jacob S. Quon…·Jack Waters

SCALPEL processes large-scale spatial transcriptomics data with improved 3D segmentation, doublet detection, and spatial alignment, showing better performance than previous methods.

1 citation

mousespatial transcriptomics

NeurosciencebioRxivPreprintSep 2, 2024

Inferring Ligand-Receptor Interactions between neuronal subtypes during mouse cortical development

Rémi Mathieu, Léa Corbières, Tangra Draia-Nicolau…·Antoine de Chevigny

The paper identifies ligand-receptor interactions between neuronal subtypes during mouse cortical development using single-cell transcriptomics and bioinformatic analysis.

1 citation

mousescRNA-seq

NeurosciencebioRxivPreprintFeb 14, 2020

Disruption of the transcription factor NEUROD2 causes an autism syndrome via cell-autonomous defects in cortical projection neurons

Karen Runge, Rémi Mathieu, Stéphane Bugeon…·Antoine de Chevigny

This study identifies NEUROD2 mutations linked to ASD and intellectual disability, showing their role in cortical development and function through mouse models.

5 citations

mousebulk RNA-seq