Brandon Schlautman

Leveraging whole-genome re-sequencing for diversity, population structure, and a public mid-density genotyping enrichment panel in crimson clover (Trifolium incarnatum L.) for breeding purposes

This paper uses whole-genome resequencing to analyze diversity and structure in crimson clover and develops a mid-density SNP capture panel for breeding applications.

Leveraging High-dimensional Seed Colorspace in Phenomic Selection Models for Herbaceous Perennial Crops

The paper uses seed color and morphology data from image scans to predict germination traits in perennial crops, showing improved prediction accuracy when combining HSV color features with morphology.

RegenPGC View: Semantic Segmentation of Perennial Groundcover Cropping Systems to Restore American Croplands

This paper develops a deep learning framework for estimating perennial groundcover crop establishment using image data, improving objectivity and efficiency in agricultural research.

SOFIA: an R package for enhancing genetic visualization with Circos

SOFIA is an R package that simplifies the creation of publication-quality Circos plots for genetic data by integrating R and Circos with minimal user intervention.

Construction of a high-density American cranberry (Vaccinium macrocarpon Ait.) composite map using genotyping-by-sequencing for multi-pedigree linkage mapping

The paper constructs a high-density cranberry composite map using GBS and SSRs to enable molecular-assisted breeding and genomic studies.