Author

Ilya R. Akberdin

Sirius University of Science and TechnologyORCID 0000-0003-0010-8620Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Systems Biology· 3

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Organism:human· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Fedor KolpakoviD· 2 shared A.Yu. Vertyshev· 1 shared Ilya N. KiseleviD· 1 shared Marina KalyuzhnayaiD· 1 shared Maxim I. MiroshnichenkoiD· 1 shared Mikhail A. KulyashoviD· 1 shared R. Hamilton· 1 shared Ruslan SharipoviD· 1 shared

Activity by Year

2021-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersSystems Biology

Fedor KolpakovORCID

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3 papers

Recent·Most cited

Modification and Analysis of Context-Specific Genome-Scale Metabolic Models: Methane-Utilizing Microbial Chassis as a Case Study

Mikhail A. Kulyashov, R. Hamilton, Y. Afshin, Semyon K. Kolmykov, Т. S. Sokolova, Tamara M. Khlebodarova, Marina Kalyuzhnaya, Ilya R. Akberdin

The paper develops a computational workflow for reconstructing and validating context-specific genome-scale metabolic models in non-model microbes using Methylotuvimicrobium alcaliphilum 20ZR as a case study.

mSystems · Dec 19, 2024Peer-reviewedSystems Biology

A modular model of immune response as a computational platform to investigate a pathogenesis of infection disease

Maxim I. Miroshnichenko, Fedor Kolpakov, Ilya R. Akberdin

The paper develops a modular mathematical model of the immune response to SARS-CoV-2 infection to better understand disease progression and immune system behavior.

bioRxiv · Aug 19, 2024 · PreprintSystems Biology

A model of exercise-induced changes in metabolism, signaling, and gene expression in skeletal muscle

Ilya R. Akberdin, Ilya N. Kiselev, Sergey S. Pintus, Ruslan Sharipov, A.Yu. Vertyshev, О. Л. Виноградова, Попов Даниил Викторович, Fedor Kolpakov

The paper develops a computational model to understand how exercise affects metabolism, signaling, and gene expression in skeletal muscle by integrating metabolic, signaling, and gene regulatory pathways.

International Journal of Molecular Sciences · Sep 26, 2021Peer-reviewedSystems Biology