SPARTA: Interpretable functional classification of microbiomes and detection of hidden cumulative effects.
Baptiste Ruiz, Arnaud Belcour, Samuel Blanquart, Sylvie Buffet‐Bataillon, Isabelle Le Huërou‐Luron, Anne Siegel, Yann Le Cunff
The paper develops a computational pipeline to classify gut microbiome states using functional annotations, showing comparable performance to microbial profiles and identifying reliable discriminant variables.
PLoS Computational Biology · Nov 18, 2024Peer-reviewedBioinformatics