Author

Jade Carter

New York Genome CenterORCID 0000-0003-2792-1662Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Organism:mouse· 1

Frequent Co-Authors

Nicolas RobineiD· 3 shared Karol Nowicki-OsuchiD· 2 shared Silas ManiatisiD· 2 shared Simon TavaréiD· 2 shared Søren GermeriD· 2 shared Benjamin Kumar WesleyiD· 1 shared Dayna M. Oschwald· 1 shared Frank Wos· 1 shared

Activity by Year

2019-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 34 mutual co-author links

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3 shared papersGenomics

Nicolas RobineORCID

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3 papers

Recent·Most cited

BioinformaticsNucleic Acids ResearchPeer-reviewedSep 22, 2026

Wavelet Based Whole Genome Doubling Aware Single Cell Copy Number Calling

Benjamin Kumar Wesley, Frank Wos, Søren Germer…·Karol Nowicki-Osuch

Songbird is a single cell whole genome sequencing copy number caller that detects whole genome duplication and outperforms existing tools in breakpoints identification and true copy number detection.

DOI 10.1093/nar/gkag960

whole-genome sequencingstatistical model

𝕏 PostBluesky

GenomicsbioRxivPreprintApr 27, 2026

Single-nucleus multiome sequencing identifies candidate regulators of mouse gastric epithelial homeostasis

Maithê Rocha Monteiro de Barros, Katharina Bosch, Salima Soualhi…·Karol Nowicki-Osuch

DOI 10.64898/2026.04.23.720450

mousescRNA-seq

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GenomicsScientific ReportsPeer-reviewedDec 13, 2019

Deep sequencing of 3 cancer cell lines on 2 sequencing platforms

Kanika S. Arora, Minita J. Shah, Molly E. Johnson…·Nicolas Robine

The paper benchmarks a new sequencing platform and develops a somatic calling pipeline using deep sequencing of cancer cell lines on two platforms.

60 citations

humanwhole-genome sequencing

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