Author

Yonghui Li

Kansas State UniversityORCID 0000-0003-4320-0806Unclaimed ORCID profile · follow to get notified of new preprints

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Yonghui Li1 paper · Chinese Academy of Sciences

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:protein sequence· 2 Approach:contrastive learning· 1 Approach:deep learning· 1 Assay:metagenomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Doina CarageaiD· 2 shared Xiaolong GuoiD· 2 shared Zhenjiao DuiD· 2 shared Weimin FuiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 6 mutual co-author links

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2 shared papersBioinformatics

Doina CarageaORCID

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2 papers

Recent·Most cited

PepBERT: Lightweight language models for bioactive peptide representation

Zhenjiao Du, Doina Caragea, Xiaolong Guo, Yonghui Li

PepBERT is a lightweight peptide language model that outperforms ESM-2 on most peptide-related tasks, enabling better representation of bioactive peptides for downstream applications.

Future Foods · Mar 21, 2026Peer-reviewedBioinformatics

FusionESP: Improved enzyme-substrate pair prediction by fusing protein and chemical knowledge

Zhenjiao Du, Weimin Fu, Xiaolong Guo, Doina Caragea, Yonghui Li

FusionESP improves enzyme-substrate pair prediction by integrating protein and chemical language models with contrastive learning, achieving high accuracy with fewer resources.

Journal of Chemical Information and Modeling · Mar 4, 2025Peer-reviewedBioinformatics