Author

Julia Eckenberger

University College CorkORCID 0000-0003-4781-0660Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Organism:plant (other)· 2 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1 Organism:mouse· 1

Frequent Co-Authors

Abel A. VlasblomiD· 2 shared Aldert ZomeriD· 2 shared Birgitta DuimiD· 2 shared Chloe E. HuseyiniD· 2 shared Christian Elend· 2 shared Daniel Crespo‐PiazueloiD· 2 shared Jaap A. WagenaariD· 2 shared Marcus Joakim ClaessoniD· 2 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersMicrobiology

Abel A. VlasblomORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

NeurosciencebioRxivPreprintJul 19, 2026

Microbiota-sensitive glial and metabolic programs define a critical window in early postnatal brainstem development

Cristina Cuesta‐Marti, Caoimhe M. K. Lynch, Maya Davies…·Lily Keane

The paper investigates how early-life microbiota influences transcriptional and metabolic programs in the developing brainstem, identifying a critical window during which microbial colonization affects pathways linked to oligodendrocyte lineage progression and tumour biology.

DOI 10.64898/2026.07.13.738238

mousebulk RNA-seq

𝕏 PostBluesky

MicrobiologyBMC MicrobiologyPeer-reviewedJan 8, 2026

Targeted isolation of bacteria with potential to competitively exclude Staphylococcus aureus in the upper respiratory tract of pigs

Abel A. Vlasblom, Shriram Patel, Peadar G. Lawlor…·Birgitta Duim

The paper identifies Lactococcus lactis strains that inhibit livestock-associated Staphylococcus aureus in pig nasal microbiomes through sequencing-guided isolation and in vitro testing.

1 citation

plant (other)bulk RNA-seq

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MicrobiologymSystemsPeer-reviewedSep 17, 2024

The developing pig respiratory microbiome harbours strains antagonistic to common respiratory pathogens

Abel A. Vlasblom, Birgitta Duim, Shriram H. Patel…·Aldert Zomer

This study examines the longitudinal development of the piglet nasal microbiome and identifies microbial interactions that could help control respiratory pathogens.

9 citations

plant (other)metagenomics

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