Author

Cecilie B Cargnelli

University of Southern DenmarkORCID 0009-0002-0875-8062Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:deconvolution· 1

Frequent Co-Authors

Jakob Vennike NielseniD· 1 shared Jesper Grud Skat MadseniD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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2 top collaborators · 1 mutual co-author link

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1 shared paperBioinformatics

Jakob Vennike NielsenORCID

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1 paper

Recent·Most cited

Benchmarking computational decontamination of ambient RNA

Cecilie B Cargnelli, Jakob Vennike Nielsen, Jesper Grud Skat Madsen

This study benchmarks ambient RNA decontamination methods using simulated and experimental datasets, finding that no single method is optimal across all scenarios, with CellBender, DecontX, and SoupX performing well.

Frontiers in Bioinformatics · Aug 19, 2026Peer-reviewedBioinformatics