Author

Simo Inkala

Tampere UniversityORCID 0009-0002-2091-8436Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Pharmacology & Toxicology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Organism:human· 3 Approach:statistical model· 3 Research Focus:database / resource· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Angela SerraiD· 3 shared Antonio FedericoiD· 3 shared Dario GrecoiD· 3 shared Alisa PaveliD· 1 shared Giorgia MigliaccioiD· 1 shared Giusy del GiudiceiD· 1 shared Jack MorikkaiD· 1 shared Lena MöbusiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersBioinformatics

Angela SerraORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MUUMI: an R package for statistical and network-based meta-analysis for MUlti-omics data Integration

Simo Inkala, Michele Fratello, Giusy del Giudice, Giorgia Migliaccio, Angela Serra, Dario Greco, Antonio Federico

MUUMI integrates multi-omics data using statistical meta-analysis and network-based methods to identify robust molecular signatures and interactomes.

BMC Bioinformatics · Feb 3, 2026Peer-reviewedBioinformatics

Curated and harmonised transcriptomics datasets of interstitial lung diseases

Simo Inkala, Antonio Federico, Angela Serra, Dario Greco

This paper curates and harmonizes transcriptomics datasets from interstitial lung disease patients to improve data FAIRness and enable integrated systems biology approaches.

Data in Brief · Oct 15, 2025Peer-reviewedBioinformatics

Toxicogenomic Assessment of In Vitro Macrophages Exposed to Profibrotic Challenge.

Jack Morikka, Antonio Federico, Lena Möbus, Simo Inkala, Alisa Pavel, Saara Sani, Maaret Vaani, Sanna K. Peltola, Angela Serra, Dario Greco

This study uses RNA sequencing to analyze immune gene responses in macrophages exposed to bleomycin, identifying dose-dependent gene alterations and linking them to cytokine and proteinase activity.

Computational and Structural Biotechnology Journal · Oct 8, 2024Peer-reviewedPharmacology & Toxicology