Author

Rida Assaf

University of ChicagoORCID 0009-0004-0702-9532Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:differential expression· 1

Frequent Co-Authors

Fangfang XiaiD· 2 shared Rick L. StevensiD· 2 shared

Activity by Year

2021-2021 · peak 2/yr

Co-Author Collaboration Network

2 top collaborators · 1 mutual co-author link

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2 shared papersBioinformatics

Fangfang XiaORCID

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2 papers

Recent·Most cited

Identifying Genomic Islands with Deep Neural Networks

Rida Assaf, Fangfang Xia, Rick L. Stevens

The paper introduces a deep learning method called Shutter Island to detect genomic islands by using image-based transfer learning, achieving better generalization than existing tools.

BMC Genomics · Jun 2, 2021Peer-reviewedBioinformatics

Detecting Operons in Bacterial Genomes via Visual Representation Learning

Rida Assaf, Fangfang Xia, Rick L. Stevens

The paper introduces a deep learning method called Operon Hunter to detect operons in bacterial genomes by learning from visual representations of genomic data, achieving better accuracy than existing tools.

Scientific Reports · Jan 22, 2021Peer-reviewedBioinformatics