Author

Minjie Shen

Virginia TechORCID 0009-0004-7364-2028Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:deconvolution· 1 Approach:statistical model· 1

Frequent Co-Authors

Adam Ma· 1 shared Alexander Glenn Shaw· 1 shared Bin Zhou· 1 shared Bingqing ZhaoiD· 1 shared Chiung-Ting WuiD· 1 shared Chunyu LiuiD· 1 shared David M. HerringtoniD· 1 shared Guoqiang Yu· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Adam Ma

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2 papers

Recent·Most cited

BiomniBench: Process-level Evaluation of LLM Agents for Real-world Biomedical Research

Yuanhao Qu, Yingzhou Lu, Xinming Tu, Serena Zhang, Tianwei She, Alexander Glenn Shaw, Jou‐Ho Shih, Bingqing Zhao, Minjie Shen, Haochen Yang, Jielin Yan, Rongchuan Zhang, Xinze Wu, Tingting Li, Bin Zhou, , Kexin Huang

BiomniBench evaluates LLM agents' research processes in biomedical tasks using expert rubrics, revealing performance gaps in method selection and reasoning.

bioRxiv · May 18, 2026 · PreprintBioinformatics

Determining molecular archetype composition and expression from bulk tissues with unsupervised deconvolution

Chiung-Ting Wu, Lulu Chen, David M. Herrington, Minjie Shen, Guoqiang Yu, Robert C. Clarke, Chunyu Liu, Yue Wang

This paper introduces an unsupervised deconvolution method, CAM3.0, to determine molecular archetype composition and expression from bulk tissues, showing its effectiveness through simulations and case studies.

bioRxiv · Jul 12, 2021 · PreprintBioinformatics