Robust Evaluation of Deep Learning-based Representation Methods for Survival and Gene Essentiality Prediction on Bulk RNA-seq Data
Baptiste Gross, Antonin Dauvin, Vincent Cabeli, Virgilio Kmetzsch, Jean El Khoury, Gaëtan Dissez, Khalil Ouardini, Simon Grouard, Alec Davi, Régis Loeb, Christian Esposito, Louis Hulot, Ridouane Ghermi, Michaël G. B. Blum, Yannis Darhi, , Alberto Romagnoni
This study evaluates deep learning-based representation methods for survival and gene essentiality prediction on bulk RNA-seq data, finding that non-DL methods perform comparably on survival tasks while DL methods excel in gene essentiality prediction.
Scientific Reports · Jul 24, 2024Peer-reviewedBioinformatics