Large Scale and Stable Graph Differential Analysis via Multi-Layer Node Embeddings and Ranking
Panagiotis Mandros, Ian Gallagher, Viola Fanfani, Chen Chen, Jonas Fischer, Anis Ismail, Lauren Hsu, Enakshi Saha, Derrick K. DeConti, John F Quackenbush
This paper introduces node2vec2rank, a method for graph differential analysis that identifies biologically relevant differences between weighted networks in cancer subtypes and single-cell dynamics.
bioRxiv · Jun 16, 2024 · PreprintBioinformatics