Author

Lidia Calderón

Kansas State UniversityORCID 0009-0007-2383-3186Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:fungi (other)· 3 Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Barbara S. ValentiD· 3 shared David E. CookiD· 3 shared Giovana CruppeiD· 3 shared Guifang LiniD· 3 shared Sanzhen LiuiD· 3 shared Ravi BikaiD· 2 shared Batiseba Tembo· 1 shared Dal‐Hoe KooiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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3 shared papersGenomics

Barbara S. ValentORCID

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3 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintJun 3, 2026

Evolution of supernumerary chromosomes in wheat blast fungal pathogens

Giovana Cruppe, Ravi Bika, Guifang Lin…·Sanzhen Liu

The paper analyzes genomic changes in mini-chromosomes of wheat blast fungal pathogens over time, showing their dynamic presence, sequence alterations, and role in pathogen adaptation.

DOI 10.64898/2026.06.01.729302

fungi (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsNAR Genomics and BioinformaticsPeer-reviewedJul 2, 2024

Using recurrent neural networks to detect supernumerary chromosomes in fungal strains causing blast diseases

Nikesh Gyawali, Yangfan Hao, Guifang Lin…·Sanzhen Liu

This study uses Bi-LSTM models to detect mini-chromosomes in M. oryzae strains, finding their prevalence increased in recent wheat strains.

6 citations

fungi (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsNew PhytologistPeer-reviewedNov 20, 2023

Rapid mini-chromosome divergence among fungal isolates causing wheat blast outbreaks in Bangladesh and Zambia

Sanzhen Liu, Guifang Lin, Sowmya R. Ramachandran…·Barbara S. Valent

The paper investigates genetic relationships among Magnaporthe oryzae isolates causing wheat blast outbreaks in Bangladesh and Zambia, finding that outbreaks were caused by genetically distinct isolates with divergent mini-chromosomes.

27 citations

fungi (other)whole-genome sequencing

𝕏 PostBluesky